60S ribosomal protein L12

Protein found in humans
RPL12
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

4V6X, 5AJ0, 3J92, 4V5Z, 5A8L

Identifiers
AliasesRPL12, L12, ribosomal protein L12
External IDsOMIM: 180475; MGI: 98002; HomoloGene: 128047; GeneCards: RPL12; OMA:RPL12 - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for RPL12
Genomic location for RPL12
Band9q33.3Start127,447,674 bp[1]
End127,451,406 bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for RPL12
Genomic location for RPL12
Band2|2 BStart32,851,571 bp[2]
End32,855,357 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • olfactory zone of nasal mucosa

  • uterine tube

  • left ovary

  • canal of the cervix

  • skin of abdomen

  • skin of leg

  • right ovary

  • lactiferous gland

  • gallbladder
Top expressed in
  • epiblast

  • embryo

  • embryo

  • yolk sac

  • esophagus

  • ileum

  • ventricular zone

  • uterus

  • morula

  • lens
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
  • protein binding
  • structural constituent of ribosome
  • rRNA binding
  • RNA binding
  • large ribosomal subunit rRNA binding
Cellular component
  • cytosol
  • extracellular exosome
  • membrane
  • cytosolic large ribosomal subunit
  • focal adhesion
  • ribosome
  • extracellular matrix
  • nucleus
  • nucleolus
  • cytoplasm
  • postsynaptic density
  • large ribosomal subunit
Biological process
  • translational initiation
  • SRP-dependent cotranslational protein targeting to membrane
  • nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
  • ribosomal large subunit assembly
  • viral transcription
  • protein biosynthesis
  • rRNA processing
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6136

269261

Ensembl

ENSG00000197958

ENSMUSG00000038900

UniProt

P30050

P35979

RefSeq (mRNA)

NM_000976

NM_009076

RefSeq (protein)

NP_000967

NP_033102

Location (UCSC)Chr 9: 127.45 – 127.45 MbChr 2: 32.85 – 32.86 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

60S ribosomal protein L12 is a protein that in humans is encoded by the RPL12 gene.[5][6]

Function

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the L11P family of ribosomal proteins. It is located in the cytoplasm. The protein binds directly to the 26S rRNA. This gene is co-transcribed with the U65 snoRNA, which is located in its fourth intron. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome.[6]

Interactions

RPL12 has been shown to interact with CDC5L.[7]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000197958 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000038900 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Chu W, Presky DH, Swerlick RA, Burns DK (March 1993). "The primary structure of human ribosomal protein L12". Nucleic Acids Res. 21 (3): 749. doi:10.1093/nar/21.3.749. PMC 309184. PMID 8441690.
  6. ^ a b "Entrez Gene: RPL12 ribosomal protein L12".
  7. ^ Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, Lamond AI (December 2000). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". EMBO J. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. PMC 305846. PMID 11101529.

Further reading

  • Wool IG, Chan YL, Glück A (1996). "Structure and evolution of mammalian ribosomal proteins". Biochem. Cell Biol. 73 (11–12): 933–47. doi:10.1139/o95-101. PMID 8722009.
  • Kato S, Sekine S, Oh SW, Kim NS, Umezawa Y, Abe N, Yokoyama-Kobayashi M, Aoki T (1995). "Construction of a human full-length cDNA bank". Gene. 150 (2): 243–50. doi:10.1016/0378-1119(94)90433-2. PMID 7821789.
  • Uchiumi T, Kominami R (1997). "Binding of mammalian ribosomal protein complex P0.P1.P2 and protein L12 to the GTPase-associated domain of 28 S ribosomal RNA and effect on the accessibility to anti-28 S RNA autoantibody". J. Biol. Chem. 272 (6): 3302–8. doi:10.1074/jbc.272.6.3302. PMID 9013569.
  • Kenmochi N, Kawaguchi T, Rozen S, Davis E, Goodman N, Hudson TJ, Tanaka T, Page DC (1998). "A map of 75 human ribosomal protein genes". Genome Res. 8 (5): 509–23. doi:10.1101/gr.8.5.509. PMID 9582194.
  • Ajuh P, Kuster B, Panov K, Zomerdijk JC, Mann M, Lamond AI (2001). "Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry". EMBO J. 19 (23): 6569–81. doi:10.1093/emboj/19.23.6569. PMC 305846. PMID 11101529.
  • Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, Mann M, Lamond AI (2002). "Directed proteomic analysis of the human nucleolus". Curr. Biol. 12 (1): 1–11. Bibcode:2002CBio...12....1A. doi:10.1016/S0960-9822(01)00650-9. PMID 11790298. S2CID 14132033.
  • Plafker SM, Macara IG (2002). "Ribosomal Protein L12 Uses a Distinct Nuclear Import Pathway Mediated by Importin 11". Mol. Cell. Biol. 22 (4): 1266–75. doi:10.1128/MCB.22.4.1266-1275.2002. PMC 134630. PMID 11809816.
  • Rush J, Moritz A, Lee KA, Guo A, Goss VL, Spek EJ, Zhang H, Zha XM, Polakiewicz RD, Comb MJ (2005). "Immunoaffinity profiling of tyrosine phosphorylation in cancer cells". Nat. Biotechnol. 23 (1): 94–101. doi:10.1038/nbt1046. PMID 15592455. S2CID 7200157.
  • Andersen JS, Lam YW, Leung AK, Ong SE, Lyon CE, Lamond AI, Mann M (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.
  • Beausoleil SA, Villén J, Gerber SA, Rush J, Gygi SP (2006). "A probability-based approach for high-throughput protein phosphorylation analysis and site localization". Nat. Biotechnol. 24 (10): 1285–92. doi:10.1038/nbt1240. PMID 16964243. S2CID 14294292.
  • Olsen JV, Blagoev B, Gnad F, Macek B, Kumar C, Mortensen P, Mann M (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983. S2CID 7827573.

External links

  • Overview of all the structural information available in the PDB for UniProt: P30050 (Human 60S ribosomal protein L12) at the PDBe-KB.


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  • 1wib: Solution structure of the N-terminal domain from mouse hypothetical protein BAB22488
    1wib: Solution structure of the N-terminal domain from mouse hypothetical protein BAB22488
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Proteins
Initiation factor
Bacterial
Mitochondrial
Archaeal
  • aIF1
  • aIF2
  • aIF5
  • aIF6
Eukaryotic
eIF1
eIF2
eIF3
eIF4
eIF5
eIF6
Elongation factor
Bacterial/​Mitochondrial
Archaeal/​Eukaryotic
Release factor
Ribosomal Proteins
Cytoplasmic
60S subunit
40S subunit
Mitochondrial
39S subunit
28S subunit
Other concepts
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